cohort¶

Limits Solr query patients by ones matching the cohort.

Functions¶

Returns a list of patients matching the OHDSI cohort id. Will limit patients in the Solr query.

cohort SocialSupportPatients:OHDSI.getCohort(100);

cohort can then be passed as an argument in tasks. For example:

define Widowed:
    Clarity.ProviderAssertion({
        cohort:SocialSupportPatients,
        termset:[WidowedTerms]
    });

Returns a list of patients or documents, matching the job_id and parameters. Will limit patients or documents in the Solr query.

Example:

cohort OpiodPatients:
    Clarity.getJobResults({
        "context":"patient",
        "job_id": 406,
        "nlpql_feature":"tookOpioids"
    });

Arguments:

Name	Type	Required	Notes
context	str	Yes	“patient” or “document”
job_id	int	No	The job_id. Not strictly required, but desirable to select the correct phenotype.
nlpql_feature	str	No	The feature name used in the NLPQL define
report_type	str	No
pipeline_type	str	No	The NLPQL pipeline feature type (e.g. “ValueExtractor”)
pipeline_id	int	No
subject	str	No
phenotype_final	bool	No	Whether the results were tagged as final or not
<any_generated_feature>	<type>	No	Any feature you wish to filter or that was generated by ClarityNLP.